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scViewer Stork Specifications

Process Details

  • Name: scViewer Stork
  • Process UUID: mvzgcmdxse8iy8b465cl8v2zkd3l8q
  • Process Group: SingleCell

Overview

The scViewer Stork process is a utility tool designed to prepare single-cell RNA sequencing data for visualization in scViewer. This process creates a renamed copy of an R data structure (RDS) file with standardized naming conventions required by the scViewer platform.

This process is implemented in Bash.

Key Functionality

  • File Preparation: Creates a copy of the input RDS file with scViewer-compatible naming
  • Data Preservation: Maintains the integrity of the original single-cell data structure
  • Standardization: Ensures consistent file naming for downstream visualization workflows

Input/Output Specification

Inputs

Required Inputs

  • RDS File
    • Description: Single-cell RNA sequencing data stored as an R data structure file
    • Format: RDS

Outputs

  • RDS File
    • Description: Renamed copy of the input RDS file formatted for scViewer compatibility
    • Format: RDS

Parameters & Settings

This process does not have user-configurable parameters.

References & Resources

  • Tool Documentation: This is a utility process for file preparation - no external tool documentation required